VoyagerPy - From geospatial to spatial omics

Data structure

VoyagerPy uses AnnData as the data structure for spatial omics data. Users who are familiar with the AnnData data structure should feel at home when using VoyagerPy.

VoyagerPy is the Python implementation of the Voyager package for R. It brings the tradition of geospatial statistics to spatial omics data analysis.

This documentation will help you get started with VoyagerPy and learn how to use it. The Technologies section lists several different technologies for scRNA-seq data. There you can find notebooks for each technology. These notebooks aim to illustrate preprocessing of raw data, basic QC, exploratory spatial data analysis and visualization with VoyagerPy. They are designed to follow the tutorial vignettes for the R package Voyager.

Please head to our installation page to get started with VoyagerPy.

Indices and tables

Index Module Index